PRATT is a tool to discover patterns conserved in a set of protein sequences.

This tool can also be run from the EBI server with very similar modalities.

STEP 1 - Enter a set of PROTEIN sequences or an alignment
Supported input:
Your input is a set of sequences an alignment help

STEP 2 - Modify default parameters (optional) » Pattern parameters
» Search parameters
» Output parameters

If you're familiar with PRATT, you can directly enter parameters in a command line format:

e.g. -PL 25

STEP 3 - Submit your job Directly submit best pattern to ScanProsite
View PRATT output file